pulseq matlab toolbox Search Results


pulseq matlab toolbox  (MathWorks Inc)
96
MathWorks Inc pulseq matlab toolbox
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Pulseq Matlab Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pulseq matlab toolbox/product/MathWorks Inc
Average 96 stars, based on 1 article reviews
pulseq matlab toolbox - by Bioz Stars, 2026-04
96/100 stars
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high-level matlab code  (MathWorks Inc)
90
MathWorks Inc high-level matlab code
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
High Level Matlab Code, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/high-level matlab code/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
high-level matlab code - by Bioz Stars, 2026-04
90/100 stars
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pulseq-cest  (MathWorks Inc)
90
MathWorks Inc pulseq-cest
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Pulseq Cest, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pulseq-cest/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
pulseq-cest - by Bioz Stars, 2026-04
90/100 stars
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official matlab toolbox  (MathWorks Inc)
90
MathWorks Inc official matlab toolbox
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Official Matlab Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/official matlab toolbox/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
official matlab toolbox - by Bioz Stars, 2026-04
90/100 stars
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matlab script ge2seq.m  (MathWorks Inc)
90
MathWorks Inc matlab script ge2seq.m
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Matlab Script Ge2seq.M, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab script ge2seq.m/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab script ge2seq.m - by Bioz Stars, 2026-04
90/100 stars
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pulseq-file  (MathWorks Inc)
90
MathWorks Inc pulseq-file
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Pulseq File, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pulseq-file/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
pulseq-file - by Bioz Stars, 2026-04
90/100 stars
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seq2ge.m script  (MathWorks Inc)
90
MathWorks Inc seq2ge.m script
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Seq2ge.M Script, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/seq2ge.m script/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
seq2ge.m script - by Bioz Stars, 2026-04
90/100 stars
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mouse: b6; 129s-gt(rosa)26sortm32 (cag-cop4*h134r/eyfp)hze/j jackson rrid:imsr_jax:012569  (Jackson Laboratory)
90
Jackson Laboratory mouse: b6; 129s-gt(rosa)26sortm32 (cag-cop4*h134r/eyfp)hze/j jackson rrid:imsr_jax:012569
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Mouse: B6; 129s Gt(Rosa)26sortm32 (Cag Cop4*H134r/Eyfp)Hze/J Jackson Rrid:Imsr Jax:012569, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse: b6; 129s-gt(rosa)26sortm32 (cag-cop4*h134r/eyfp)hze/j jackson rrid:imsr_jax:012569/product/Jackson Laboratory
Average 90 stars, based on 1 article reviews
mouse: b6; 129s-gt(rosa)26sortm32 (cag-cop4*h134r/eyfp)hze/j jackson rrid:imsr_jax:012569 - by Bioz Stars, 2026-04
90/100 stars
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mouse: b6.cg-tg(camk2a-cre)t29-1stl/j jackson rrid:imsr_jax:005359  (Jackson Laboratory)
90
Jackson Laboratory mouse: b6.cg-tg(camk2a-cre)t29-1stl/j jackson rrid:imsr_jax:005359
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Mouse: B6.Cg Tg(Camk2a Cre)T29 1stl/J Jackson Rrid:Imsr Jax:005359, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse: b6.cg-tg(camk2a-cre)t29-1stl/j jackson rrid:imsr_jax:005359/product/Jackson Laboratory
Average 90 stars, based on 1 article reviews
mouse: b6.cg-tg(camk2a-cre)t29-1stl/j jackson rrid:imsr_jax:005359 - by Bioz Stars, 2026-04
90/100 stars
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mouse anti-calbindin d-28k swant cat# 300  (Swant)
90
Swant mouse anti-calbindin d-28k swant cat# 300
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
Mouse Anti Calbindin D 28k Swant Cat# 300, supplied by Swant, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse anti-calbindin d-28k swant cat# 300/product/Swant
Average 90 stars, based on 1 article reviews
mouse anti-calbindin d-28k swant cat# 300 - by Bioz Stars, 2026-04
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c&b metabond parkell cat#s380  (Parkell Inc)
90
Parkell Inc c&b metabond parkell cat#s380
Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). <t>Pulseq</t> sequence and MRD metadata files are created with <t>either</t> <t>PyPulseq</t> or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.
C&B Metabond Parkell Cat#S380, supplied by Parkell Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/c&b metabond parkell cat#s380/product/Parkell Inc
Average 90 stars, based on 1 article reviews
c&b metabond parkell cat#s380 - by Bioz Stars, 2026-04
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Image Search Results


Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). Pulseq sequence and MRD metadata files are created with either PyPulseq or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.

Journal: Magnetic resonance in medicine

Article Title: Open-Source MR Imaging and Reconstruction Workflow

doi: 10.1002/mrm.29384

Figure Lengend Snippet: Overview of the whole workflow with data acquisition at an MRI scanner (light blue) or in JEMRIS simulations (light green). Pulseq sequence and MRD metadata files are created with either PyPulseq or JEMRIS. The sequence file is executed at the scanner using a vendor-specific interpreter. Raw data are sent to the reconstruction server via the FIRE interface and the metadata from the MRD file are merged. Images are reconstructed with BART and are sent back to the scanner via FIRE. In an offline reconstruction, the FIRE interface is replaced by an MRD converter and a Python-based client. Acquired data from JEMRIS simulations is merged with the metadata inside JEMRIS and saved in the MRD format. The same reconstruction pipeline as for data from an MRI scanner data is executed.

Article Snippet: For identification of the files, the MD5 hash of the Pulseq sequence file is calculated and appended to both the sequence and the metadata file as a signature. . PyPulseq The PyPulseq toolbox implements the functionalities of the official Pulseq MATLAB toolbox in Python.

Techniques: Sequencing